共同进化算法具有广泛的应用程序，例如硬件设计，棋盘游戏策略的演变以及修补软件错误。但是，这些算法知之甚少，并且应用通常受到病理行为的限制，例如梯度丧失，相对过度归纳化和平庸的客观性停滞。开发一种可以预测共同进化算法有效和可靠的解决方案的理论是一个开放的挑战。本文为开发基于人群的竞争共同进化算法的运行时分析提供了第一步。我们提供了一个数学框架，用于描述和推理共同进化过程的性能。框架的示例应用显示了一个方案，其中简单的共同进化算法在多项式预期时间中获得了解决方案。最后，我们描述了共同进化算法需要指数时间的设置，并以压倒性的高可能性获得解决方案。

In both terrestrial and marine ecology, physical tagging is a frequently used method to study population dynamics and behavior. However, such tagging techniques are increasingly being replaced by individual re-identification using image analysis. This paper introduces a contrastive learning-based model for identifying individuals. The model uses the first parts of the Inception v3 network, supported by a projection head, and we use contrastive learning to find similar or dissimilar image pairs from a collection of uniform photographs. We apply this technique for corkwing wrasse, Symphodus melops, an ecologically and commercially important fish species. Photos are taken during repeated catches of the same individuals from a wild population, where the intervals between individual sightings might range from a few days to several years. Our model achieves a one-shot accuracy of 0.35, a 5-shot accuracy of 0.56, and a 100-shot accuracy of 0.88, on our dataset.

The success of neural networks builds to a large extent on their ability to create internal knowledge representations from real-world high-dimensional data, such as images, sound, or text. Approaches to extract and present these representations, in order to explain the neural network's decisions, is an active and multifaceted research field. To gain a deeper understanding of a central aspect of this field, we have performed a targeted review focusing on research that aims to associate internal representations with human understandable concepts. In doing this, we added a perspective on the existing research by using primarily deductive nomological explanations as a proposed taxonomy. We find this taxonomy and theories of causality, useful for understanding what can be expected, and not expected, from neural network explanations. The analysis additionally uncovers an ambiguity in the reviewed literature related to the goal of model explainability; is it understanding the ML model or, is it actionable explanations useful in the deployment domain?

Many researchers have voiced their support towards Pearl's counterfactual theory of causation as a stepping stone for AI/ML research's ultimate goal of intelligent systems. As in any other growing subfield, patience seems to be a virtue since significant progress on integrating notions from both fields takes time, yet, major challenges such as the lack of ground truth benchmarks or a unified perspective on classical problems such as computer vision seem to hinder the momentum of the research movement. This present work exemplifies how the Pearl Causal Hierarchy (PCH) can be understood on image data by providing insights on several intricacies but also challenges that naturally arise when applying key concepts from Pearlian causality to the study of image data.

Few-shot methods for accurate modeling under sparse label-settings have improved significantly. However, the applications of few-shot modeling in natural language processing remain solely in the field of document classification. With recent performance improvements, supervised few-shot methods, combined with a simple topic extraction method pose a significant challenge to unsupervised topic modeling methods. Our research shows that supervised few-shot learning, combined with a simple topic extraction method, can outperform unsupervised topic modeling techniques in terms of generating coherent topics, even when only a few labeled documents per class are used.

Large, text-conditioned generative diffusion models have recently gained a lot of attention for their impressive performance in generating high-fidelity images from text alone. However, achieving high-quality results is almost unfeasible in a one-shot fashion. On the contrary, text-guided image generation involves the user making many slight changes to inputs in order to iteratively carve out the envisioned image. However, slight changes to the input prompt often lead to entirely different images being generated, and thus the control of the artist is limited in its granularity. To provide flexibility, we present the Stable Artist, an image editing approach enabling fine-grained control of the image generation process. The main component is semantic guidance (SEGA) which steers the diffusion process along variable numbers of semantic directions. This allows for subtle edits to images, changes in composition and style, as well as optimization of the overall artistic conception. Furthermore, SEGA enables probing of latent spaces to gain insights into the representation of concepts learned by the model, even complex ones such as 'carbon emission'. We demonstrate the Stable Artist on several tasks, showcasing high-quality image editing and composition.

Photo-identification (photo-id) is one of the main non-invasive capture-recapture methods utilised by marine researchers for monitoring cetacean (dolphin, whale, and porpoise) populations. This method has historically been performed manually resulting in high workload and cost due to the vast number of images collected. Recently automated aids have been developed to help speed-up photo-id, although they are often disjoint in their processing and do not utilise all available identifying information. Work presented in this paper aims to create a fully automatic photo-id aid capable of providing most likely matches based on all available information without the need for data pre-processing such as cropping. This is achieved through a pipeline of computer vision models and post-processing techniques aimed at detecting cetaceans in unedited field imagery before passing them downstream for individual level catalogue matching. The system is capable of handling previously uncatalogued individuals and flagging these for investigation thanks to catalogue similarity comparison. We evaluate the system against multiple real-life photo-id catalogues, achieving mAP@IOU[0.5] = 0.91, 0.96 for the task of dorsal fin detection on catalogues from Tanzania and the UK respectively and 83.1, 97.5% top-10 accuracy for the task of individual classification on catalogues from the UK and USA.

We design and implement an adaptive machine learning equalizer that alternates multiple linear and nonlinear computational layers on an FPGA. On-chip training via gradient backpropagation is shown to allow for real-time adaptation to time-varying channel impairments.

We apply topological data analysis (TDA) to speech classification problems and to the introspection of a pretrained speech model, HuBERT. To this end, we introduce a number of topological and algebraic features derived from Transformer attention maps and embeddings. We show that a simple linear classifier built on top of such features outperforms a fine-tuned classification head. In particular, we achieve an improvement of about $9\%$ accuracy and $5\%$ ERR on four common datasets; on CREMA-D, the proposed feature set reaches a new state of the art performance with accuracy $80.155$. We also show that topological features are able to reveal functional roles of speech Transformer heads; e.g., we find the heads capable to distinguish between pairs of sample sources (natural/synthetic) or voices without any downstream fine-tuning. Our results demonstrate that TDA is a promising new approach for speech analysis, especially for tasks that require structural prediction.

Pre-trained protein language models have demonstrated significant applicability in different protein engineering task. A general usage of these pre-trained transformer models latent representation is to use a mean pool across residue positions to reduce the feature dimensions to further downstream tasks such as predicting bio-physics properties or other functional behaviours. In this paper we provide a two-fold contribution to machine learning (ML) driven drug design. Firstly, we demonstrate the power of sparsity by promoting penalization of pre-trained transformer models to secure more robust and accurate melting temperature (Tm) prediction of single-chain variable fragments with a mean absolute error of 0.23C. Secondly, we demonstrate the power of framing our prediction problem in a probabilistic framework. Specifically, we advocate for the need of adopting probabilistic frameworks especially in the context of ML driven drug design.